i think a similar thing happened again.... i just watched my E tick over to 15 and completed a mission. requirements of 15 E. the mission has a risk of loss of additional energy and i was lucky enough to trigger this effect. problem is, after completing the mission and triggering the effect i still had 3 E left over....
simplified:
started with 15 energy --> did mission once (required 15 energy) --> activated effect which resulted in additional loss of energy --> had 3 energy left
